Secretary of the Interior

Tom - My windshield had a rock hit it dead center of the drivers vision. It had other problems, delamination and clouding so I decided to replace it. To get the windshield out they apparently had to take all the stainless off except the rear window trim. The outer roof rails were loaded with what looked like plumbers putty. My question is when those rails are put back on should the drain rail and the most inner part of the outer roof rail be packed with frest plumber putty. I bought from Eastwood strips of a pliable sealing compound. How did you do yours, any advice would be welcome.
Thanks,
Dick Koch